How to optimize queries in ClickHouse

Galaxy Glossary

How do I optimize queries in ClickHouse?

The OPTIMIZE TABLE statement merges data parts, removes duplicates, and boosts ClickHouse query speed.

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Description

Table of Contents

Why should I run OPTIMIZE TABLE?

Merging many small parts into larger ones reduces the number of files ClickHouse scans. Fewer files mean faster reads, lower CPU usage, and predictable latency during peak traffic.

When is FINAL required?

Use the FINAL keyword when you need fresh aggregation results right after heavy inserts or updates. It forces a complete merge so aggregating engines (e.g., SummingMergeTree) return up-to-date values.

How do I deduplicate rows quickly?

Add DEDUPLICATE with a column list. ClickHouse removes duplicate rows in the specified partition, eliminating overlap from distributed ingestion pipelines.

Which settings accelerate optimization?

Increase max_bytes_to_merge_at_max_space_in_pool to let background merges process bigger parts. Raise parts_to_throw_insert only in emergency scenarios to reject new parts when merge lag is huge.

Can I target a single partition?

Yes. Provide the partition key in the PARTITION clause to limit merging and deduplication to that slice, saving resources and avoiding cluster-wide locks.

What are best practices for ecommerce tables?

Partition Orders by toYYYYMM(order_date) and order by (customer_id, order_date). Schedule nightly OPTIMIZE TABLE Orders PARTITION … jobs so morning dashboards run against compact parts.

Tip: monitor merge lag

Query system.parts and alert when the number of active parts per partition exceeds 300. Trigger an immediate OPTIMIZE if it spikes.

Tip: combine with materialized views

Run OPTIMIZE first on raw tables, then on aggregated materialized views to maintain fast rollups.

Why How to optimize queries in ClickHouse is important

How to optimize queries in ClickHouse Example Usage


-- Remove duplicate order items for May 2024 and force a final merge
OPTIMIZE TABLE OrderItems
    PARTITION '202405'
    FINAL
    SETTINGS mutations_sync = 1;

How to optimize queries in ClickHouse Syntax


OPTIMIZE TABLE [db.]table_name
    [PARTITION partition_id]
    [FINAL | DEDUPLICATE [BY (col1, col2, …)]]
    [SETTINGS setting_name = value [, …]]

-- Example for ecommerce data
OPTIMIZE TABLE Orders
    PARTITION toYYYYMM(order_date)
    DEDUPLICATE BY (id)
    SETTINGS mutations_sync = 1;

Common Mistakes

Frequently Asked Questions (FAQs)

Does OPTIMIZE affect replication?

Yes. The merge operation is replicated to other nodes, ensuring consistent part sets across the cluster.

Can I cancel a long optimization?

Use KILL MUTATION WHERE command LIKE 'optimize%'. Be sure parts are consistent after cancellation.

Is OPTIMIZE the same as VACUUM in PostgreSQL?

No. VACUUM reclaims dead rows, while OPTIMIZE merges storage parts and optionally deduplicates rows.

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